J4_7ZPQ_004
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZPQ_004 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1079
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|5|C|185
7ZPQ|1|5|U|186
7ZPQ|1|5|A|187
7ZPQ|1|5|U|188
7ZPQ|1|5|G|189
*
7ZPQ|1|5|C|205
7ZPQ|1|5|G|206
7ZPQ|1|5|U|207
7ZPQ|1|5|C|208
*
7ZPQ|1|5|G|212
7ZPQ|1|5|A|213
7ZPQ|1|5|G|214
*
7ZPQ|1|5|C|226
7ZPQ|1|5|G|227
7ZPQ|1|5|U|228
7ZPQ|1|5|G|229
7ZPQ|1|5|U|230
7ZPQ|1|5|G|231
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- RPL4A isoform 1
- Chain BX
- 60S ribosomal protein L26-A
Coloring options: