J4_7ZPQ_005
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7ZPQ|1|5|A|1452, 7ZPQ|1|5|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZPQ_005 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.0732
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZPQ|1|5|C|1451
7ZPQ|1|5|A|1452
7ZPQ|1|5|A|1453
7ZPQ|1|5|A|1454
7ZPQ|1|5|U|1455
7ZPQ|1|5|A|1456
7ZPQ|1|5|U|1457
*
7ZPQ|1|5|A|1475
7ZPQ|1|5|G|1476
*
7ZPQ|1|5|U|1877
7ZPQ|1|5|G|1878
7ZPQ|1|5|A|1879
7ZPQ|1|5|U|1880
*
7ZPQ|1|5|A|2352
7ZPQ|1|5|G|2353
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BO
- 60S ribosomal protein L17-A
- Chain BQ
- 60S ribosomal protein L19-A
- Chain Bc
- 60S ribosomal protein L31-A
Coloring options: