J4_7ZPQ_006
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7ZPQ|1|5|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZPQ_006 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0527
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZPQ|1|5|G|1492
7ZPQ|1|5|G|1493
7ZPQ|1|5|U|1494
7ZPQ|1|5|U|1495
7ZPQ|1|5|C|1496
*
7ZPQ|1|5|G|1520
7ZPQ|1|5|G|1521
7ZPQ|1|5|U|1522
7ZPQ|1|5|U|1523
7ZPQ|1|5|A|1524
7ZPQ|1|5|G|1525
*
7ZPQ|1|5|C|1614
7ZPQ|1|5|C|1615
*
7ZPQ|1|5|G|1829
7ZPQ|1|5|G|1830
7ZPQ|1|5|U|1831
7ZPQ|1|5|C|1832
7ZPQ|1|5|G|1833
7ZPQ|1|5|U|1834
7ZPQ|1|5|A|1835
7ZPQ|1|5|C|1836
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BQ
- 60S ribosomal protein L19-A
- Chain BW
- 60S ribosomal protein L25
- Chain Bf
- 60S ribosomal protein L34-A
- Chain Bi
- 60S ribosomal protein L37-A
- Chain Bj
- RPL38 isoform 1
- Chain Bk
- 60S ribosomal protein L39
Coloring options: