J4_7ZPQ_008
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZPQ_008 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0602
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZPQ|1|5|G|2130
7ZPQ|1|5|A|2131
7ZPQ|1|5|C|2132
7ZPQ|1|5|U|2133
7ZPQ|1|5|G|2134
*
7ZPQ|1|5|C|2146
7ZPQ|1|5|A|2147
7ZPQ|1|5|U|2148
7ZPQ|1|5|A|2149
7ZPQ|1|5|G|2150
*
7ZPQ|1|5|U|2186
7ZPQ|1|5|G|2187
7ZPQ|1|5|A|2188
7ZPQ|1|5|U|2189
7ZPQ|1|5|U|2190
*
7ZPQ|1|5|A|2317
7ZPQ|1|5|U|2318
7ZPQ|1|5|U|2319
7ZPQ|1|5|A|2320
7ZPQ|1|5|A|2321
7ZPQ|1|5|C|2322
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- 60S ribosomal protein L2-A
- Chain Bm
- RPL41A isoform 1
- Chain Bo
- 60S ribosomal protein L43-A
Coloring options: