J4_7ZQ5_001

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ZQ5|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZQ5_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1388

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|C|268
7ZQ5|1|b|C|269
*
7ZQ5|1|b|G|370
7ZQ5|1|b|A|371
7ZQ5|1|b|G|372
7ZQ5|1|b|U|373
7ZQ5|1|b|A|374
7ZQ5|1|b|G|375
*
7ZQ5|1|b|U|399
7ZQ5|1|b|G|400
7ZQ5|1|b|A|401
7ZQ5|1|b|A|402
7ZQ5|1|b|U|403
7ZQ5|1|b|A|404
7ZQ5|1|b|U|405
7ZQ5|1|b|G|406
*
7ZQ5|1|b|C|421
7ZQ5|1|b|A|422
7ZQ5|1|b|A|423
7ZQ5|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9