J4_7ZQ6_001
3D structure
- PDB id
- 7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- AUAG*CAC*GGGGUCG*UU
- Length
- 16 nucleotides
- Bulged bases
- 7ZQ6|1|M|U|8, 7ZQ6|1|M|U|47, 7ZQ6|1|M|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZQ6_001 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2332
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7ZQ6|1|M|A|7
7ZQ6|1|M|U|8
7ZQ6|1|M|A|9
7ZQ6|1|M|G|10
*
7ZQ6|1|M|C|25
7ZQ6|1|M|A|26
7ZQ6|1|M|C|27
*
7ZQ6|1|M|G|43
7ZQ6|1|M|G|44
7ZQ6|1|M|G|45
7ZQ6|1|M|G|46
7ZQ6|1|M|U|47
7ZQ6|1|M|C|48
7ZQ6|1|M|G|49
*
7ZQ6|1|M|U|65
7ZQ6|1|M|U|66
Current chains
- Chain M
- Gly-tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 50S ribosomal protein L16
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