J4_7ZQ6_002

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ZQ6|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZQ6_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1007

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ6|1|b|C|268
7ZQ6|1|b|C|269
*
7ZQ6|1|b|G|370
7ZQ6|1|b|A|371
7ZQ6|1|b|G|372
7ZQ6|1|b|U|373
7ZQ6|1|b|A|374
7ZQ6|1|b|G|375
*
7ZQ6|1|b|U|399
7ZQ6|1|b|G|400
7ZQ6|1|b|A|401
7ZQ6|1|b|A|402
7ZQ6|1|b|U|403
7ZQ6|1|b|A|404
7ZQ6|1|b|U|405
7ZQ6|1|b|G|406
*
7ZQ6|1|b|C|421
7ZQ6|1|b|A|422
7ZQ6|1|b|A|423
7ZQ6|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9