J4_7ZTA_001

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7ZTA|1|16S1|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2976

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZTA|1|16S1|G|115
7ZTA|1|16S1|A|116
7ZTA|1|16S1|G|117
7ZTA|1|16S1|U|118
7ZTA|1|16S1|A|119
7ZTA|1|16S1|A|120
7ZTA|1|16S1|U|121
7ZTA|1|16S1|G|122
*
7ZTA|1|16S1|U|239
7ZTA|1|16S1|G|240
*
7ZTA|1|16S1|C|286
7ZTA|1|16S1|U|287
7ZTA|1|16S1|A|288
7ZTA|1|16S1|G|289
*
7ZTA|1|16S1|C|311
7ZTA|1|16S1|C|312

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S161

30S ribosomal protein S16

Chain S171

30S ribosomal protein S17