J4_7ZTA_002

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7ZTA|1|16S1|C|183, 7ZTA|1|16S1|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1388

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ZTA|1|16S1|G|142
7ZTA|1|16S1|A|143
7ZTA|1|16S1|G|144
*
7ZTA|1|16S1|C|178
7ZTA|1|16S1|A|179
7ZTA|1|16S1|U|180
7ZTA|1|16S1|A|181
7ZTA|1|16S1|A|182
7ZTA|1|16S1|C|183
7ZTA|1|16S1|G|184
*
7ZTA|1|16S1|C|193
7ZTA|1|16S1|C|194
7ZTA|1|16S1|A|195
7ZTA|1|16S1|A|196
7ZTA|1|16S1|A|197
7ZTA|1|16S1|G|198
*
7ZTA|1|16S1|U|219
7ZTA|1|16S1|G|220
7ZTA|1|16S1|C|221

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S201

30S ribosomal protein S20