J4_7ZTA_004

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ZTA|1|23S1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0976

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZTA|1|23S1|C|268
7ZTA|1|23S1|C|269
*
7ZTA|1|23S1|G|370
7ZTA|1|23S1|A|371
7ZTA|1|23S1|G|372
7ZTA|1|23S1|U|373
7ZTA|1|23S1|A|374
7ZTA|1|23S1|G|375
*
7ZTA|1|23S1|U|399
7ZTA|1|23S1|G|400
7ZTA|1|23S1|A|401
7ZTA|1|23S1|A|402
7ZTA|1|23S1|U|403
7ZTA|1|23S1|A|404
7ZTA|1|23S1|U|405
7ZTA|1|23S1|G|406
*
7ZTA|1|23S1|C|421
7ZTA|1|23S1|A|422
7ZTA|1|23S1|A|423
7ZTA|1|23S1|G|424

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L091

50S ribosomal protein L9

Chain L281

50S ribosomal protein L28