J4_7ZTA_007

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7ZTA|1|23S1|G|1271, 7ZTA|1|23S1|A|1272, 7ZTA|1|23S1|U|1273, 7ZTA|1|23S1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0803

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7ZTA|1|23S1|C|1270
7ZTA|1|23S1|G|1271
7ZTA|1|23S1|A|1272
7ZTA|1|23S1|U|1273
7ZTA|1|23S1|A|1274
7ZTA|1|23S1|A|1275
7ZTA|1|23S1|A|1276
*
7ZTA|1|23S1|U|1294
7ZTA|1|23S1|C|1295
*
7ZTA|1|23S1|G|1645
7ZTA|1|23S1|C|1646
7ZTA|1|23S1|U|1647
7ZTA|1|23S1|U|1648
*
7ZTA|1|23S1|A|2009
7ZTA|1|23S1|G|2010

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L171

50S ribosomal protein L17

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32