3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CUAAG*UUGAU*ACC*GUG
Length
16 nucleotides
Bulged bases
7ZUX|1|5|A|2658
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZUX_014 not in the Motif Atlas
Homologous match to J4_8P9A_019
Geometric discrepancy: 0.1264
The information below is about J4_8P9A_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

7ZUX|1|5|C|2655
7ZUX|1|5|U|2656
7ZUX|1|5|A|2657
7ZUX|1|5|A|2658
7ZUX|1|5|G|2659
*
7ZUX|1|5|U|2713
7ZUX|1|5|U|2714
7ZUX|1|5|G|2715
7ZUX|1|5|A|2716
7ZUX|1|5|U|2717
*
7ZUX|1|5|A|2741
7ZUX|1|5|C|2742
7ZUX|1|5|C|2743
*
7ZUX|1|5|G|2752
7ZUX|1|5|U|2753
7ZUX|1|5|G|2754

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain ED
60S ribosomal protein L5
Chain ES
60S ribosomal protein L21-A
Chain Ea
60S ribosomal protein L29
Chain En
60S ribosomal protein L42-A

Coloring options:


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