J4_8A57_001

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8A57|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A57_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1735

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8A57|1|A|C|270
8A57|1|A|C|271
*
8A57|1|A|G|416
8A57|1|A|A|417
8A57|1|A|G|418
8A57|1|A|U|419
8A57|1|A|A|420
8A57|1|A|C|421
*
8A57|1|A|G|445
8A57|1|A|G|446
8A57|1|A|A|447
8A57|1|A|A|448
8A57|1|A|U|449
8A57|1|A|C|450
8A57|1|A|C|451
8A57|1|A|G|452
*
8A57|1|A|C|467
8A57|1|A|A|468
8A57|1|A|A|469
8A57|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28