J4_8A57_009
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8A57|1|A|A|2321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8A57_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.0781
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8A57|1|A|C|2318
8A57|1|A|A|2319
8A57|1|A|A|2320
8A57|1|A|A|2321
8A57|1|A|G|2322
*
8A57|1|A|U|2376
8A57|1|A|U|2377
8A57|1|A|G|2378
8A57|1|A|A|2379
8A57|1|A|C|2380
*
8A57|1|A|G|2403
8A57|1|A|G|2404
8A57|1|A|G|2405
*
8A57|1|A|C|2414
8A57|1|A|G|2415
8A57|1|A|G|2416
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33 1
- Chain 8
- 50S ribosomal protein L35
- Chain Z
- 50S ribosomal protein L27
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