J4_8A5I_005

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8A5I|1|A|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A5I_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0801

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8A5I|1|A|G|1354
8A5I|1|A|U|1355
8A5I|1|A|U|1356
8A5I|1|A|U|1357
8A5I|1|A|C|1358
*
8A5I|1|A|G|1382
8A5I|1|A|G|1383
8A5I|1|A|U|1384
8A5I|1|A|U|1385
8A5I|1|A|A|1386
8A5I|1|A|G|1387
*
8A5I|1|A|C|1448
8A5I|1|A|C|1449
*
8A5I|1|A|G|1646
8A5I|1|A|C|1647
8A5I|1|A|C|1648
8A5I|1|A|C|1649
8A5I|1|A|G|1650
8A5I|1|A|U|1651
8A5I|1|A|A|1652
8A5I|1|A|C|1653

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23