J4_8A5I_008

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8A5I|1|A|A|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A5I_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0652

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

8A5I|1|A|C|1866
8A5I|1|A|U|1867
8A5I|1|A|G|1868
*
8A5I|1|A|C|1938
8A5I|1|A|G|1939
*
8A5I|1|A|C|1957
8A5I|1|A|C|1958
8A5I|1|A|U|1959
8A5I|1|A|A|1960
8A5I|1|A|A|1961
8A5I|1|A|G|1962
8A5I|1|A|G|1963
8A5I|1|A|U|1964
8A5I|1|A|A|1965
8A5I|1|A|G|1966
*
8A5I|1|A|C|2000
8A5I|1|A|G|2001
8A5I|1|A|A|2002
8A5I|1|A|A|2003
8A5I|1|A|A|2004
8A5I|1|A|G|2005

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2