J4_8A5I_010

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGC*GAC*GGCAG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A5I_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.2185

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8A5I|1|A|G|2676
8A5I|1|A|A|2677
8A5I|1|A|G|2678
8A5I|1|A|C|2679
*
8A5I|1|A|G|2707
8A5I|1|A|A|2708
8A5I|1|A|C|2709
*
8A5I|1|A|G|2764
8A5I|1|A|G|2765
8A5I|1|A|C|2766
8A5I|1|A|A|2767
8A5I|1|A|G|2768
*
8A5I|1|A|C|2802
8A5I|1|A|C|2803
8A5I|1|A|C|2804

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14