J4_8AGZ_001
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8AGZ|1|f|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AGZ_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0867
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8AGZ|1|f|U|112
8AGZ|1|f|C|113
*
8AGZ|1|f|G|267
8AGZ|1|f|A|268
8AGZ|1|f|G|269
8AGZ|1|f|U|270
8AGZ|1|f|C|271
8AGZ|1|f|G|272
*
8AGZ|1|f|C|293
8AGZ|1|f|U|294
8AGZ|1|f|A|295
8AGZ|1|f|A|296
8AGZ|1|f|G|297
8AGZ|1|f|U|298
8AGZ|1|f|G|299
*
8AGZ|1|f|U|316
8AGZ|1|f|A|317
8AGZ|1|f|A|318
8AGZ|1|f|A|319
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain U
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L36-A
- Chain t
- 60S ribosomal protein L13-A
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