J4_8AM9_012

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AM9_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0522

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8AM9|1|a|A|1772
8AM9|1|a|A|1773
8AM9|1|a|C|1774
8AM9|1|a|U|1775
8AM9|1|a|G|1776
*
8AM9|1|a|C|1788
8AM9|1|a|A|1789
8AM9|1|a|C|1790
8AM9|1|a|A|1791
8AM9|1|a|G|1792
*
8AM9|1|a|U|1827
8AM9|1|a|G|1828
8AM9|1|a|A|1829
8AM9|1|a|C|1830
*
8AM9|1|a|G|1975
8AM9|1|a|U|1976
8AM9|1|a|A|1977
8AM9|1|a|A|1978
8AM9|1|a|U|1979

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2