J4_8AM9_014
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 8AM9|1|a|A|2288, 8AM9|1|a|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AM9_014 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0556
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AM9|1|a|C|2285
8AM9|1|a|G|2286
8AM9|1|a|A|2287
8AM9|1|a|A|2288
8AM9|1|a|G|2289
*
8AM9|1|a|U|2343
8AM9|1|a|U|2344
8AM9|1|a|G|2345
8AM9|1|a|A|2346
8AM9|1|a|C|2347
*
8AM9|1|a|G|2370
8AM9|1|a|G|2371
8AM9|1|a|U|2372
*
8AM9|1|a|A|2381
8AM9|1|a|G|2382
8AM9|1|a|G|2383
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
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