J4_8ANA_008

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ANA_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0372

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8ANA|1|a|A|1772
8ANA|1|a|A|1773
8ANA|1|a|C|1774
8ANA|1|a|U|1775
8ANA|1|a|G|1776
*
8ANA|1|a|C|1788
8ANA|1|a|A|1789
8ANA|1|a|C|1790
8ANA|1|a|A|1791
8ANA|1|a|G|1792
*
8ANA|1|a|U|1827
8ANA|1|a|G|1828
8ANA|1|a|A|1829
8ANA|1|a|C|1830
*
8ANA|1|a|G|1975
8ANA|1|a|U|1976
8ANA|1|a|A|1977
8ANA|1|a|A|1978
8ANA|1|a|U|1979

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2