J4_8B2L_003

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAUAU*AG*CGAU*AG

Length

15 nucleotides

Bulged bases

8B2L|1|A3|A|1463, 8B2L|1|A3|U|1466, 8B2L|1|A3|A|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B2L_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1642

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|1462
8B2L|1|A3|A|1463
8B2L|1|A3|A|1464
8B2L|1|A3|A|1465
8B2L|1|A3|U|1466
8B2L|1|A3|A|1467
8B2L|1|A3|U|1468
*
8B2L|1|A3|A|1486
8B2L|1|A3|G|1487
*
8B2L|1|A3|C|1883
8B2L|1|A3|G|1884
8B2L|1|A3|A|1885
8B2L|1|A3|U|1886
*
8B2L|1|A3|A|2355
8B2L|1|A3|G|2356

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain Q3

eL31 (60S ribosomal protein L31)

Chain j3

50S ribosomal protein L22, chloroplastic