J4_8B2L_006
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GG*UU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_006 not in the Motif Atlas
- Homologous match to J4_8C3A_005
- Geometric discrepancy: 0.2445
- The information below is about J4_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|G|1678
8B2L|1|A3|G|1679
*
8B2L|1|A3|U|1697
8B2L|1|A3|U|1698
*
8B2L|1|A3|A|1757
8B2L|1|A3|G|1758
*
8B2L|1|A3|U|1778
8B2L|1|A3|C|1779
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain H3
- Ribosomal protein L19
- Chain K3
- 60S ribosomal protein L22-2-like
- Chain T3
- 60S ribosomal protein L34
- Chain W3
- 60S ribosomal protein L38
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