J4_8B2L_007
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)UA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_007 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1889
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|G|2134
8B2L|1|A3|A|2135
8B2L|1|A3|C|2136
8B2L|1|A3|PSU|2137
8B2L|1|A3|G|2138
*
8B2L|1|A3|C|2150
8B2L|1|A3|A|2151
8B2L|1|A3|A|2152
8B2L|1|A3|A|2153
8B2L|1|A3|G|2154
*
8B2L|1|A3|U|2189
8B2L|1|A3|G|2190
8B2L|1|A3|A|2191
8B2L|1|A3|U|2192
8B2L|1|A3|U|2193
*
8B2L|1|A3|A|2320
8B2L|1|A3|PSU|2321
8B2L|1|A3|U|2322
8B2L|1|A3|A|2323
8B2L|1|A3|A2M|2324
8B2L|1|A3|C|2325
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain a3
- 60S ribosomal protein L37a
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
- Chain o3
- uL2 (60S ribosomal protein L8)
- Chain p3
- 60S ribosomal protein L41
Coloring options: