J4_8B2L_008
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(PSU)G
- Length
- 21 nucleotides
- Bulged bases
- 8B2L|1|A3|PSU|2317
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1452
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|C|2195
8B2L|1|A3|U|2196
8B2L|1|A3|G|2197
*
8B2L|1|A3|C|2251
8B2L|1|A3|G|2252
*
8B2L|1|A3|C|2270
8B2L|1|A3|U|2271
8B2L|1|A3|U|2272
8B2L|1|A3|A|2273
8B2L|1|A3|A|2274
8B2L|1|A3|G|2275
8B2L|1|A3|G|2276
8B2L|1|A3|U|2277
8B2L|1|A3|A|2278
8B2L|1|A3|G|2279
*
8B2L|1|A3|U|2313
8B2L|1|A3|G|2314
8B2L|1|A3|A|2315
8B2L|1|A3|A|2316
8B2L|1|A3|PSU|2317
8B2L|1|A3|G|2318
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain W2
- Transfer RNA; tRNA
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
- Chain o3
- uL2 (60S ribosomal protein L8)
- Chain p3
- 60S ribosomal protein L41
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