J4_8B2L_011

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAA*UC*GCU*GGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B2L_011 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.2299

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.2

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8B2L|1|A3|U|3012
8B2L|1|A3|A|3013
8B2L|1|A3|A|3014
*
8B2L|1|A3|U|3044
8B2L|1|A3|C|3045
*
8B2L|1|A3|G|3100
8B2L|1|A3|C|3101
8B2L|1|A3|U|3102
*
8B2L|1|A3|G|3136
8B2L|1|A3|G|3137
8B2L|1|A3|G|3138

Current chains

Chain A3

25S rRNA

Nearby chains

Chain d3

uL13 (60S ribosomal protein L13a)

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)