J4_8B5L_005

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8B5L|1|5|A|2209, 8B5L|1|5|U|2212, 8B5L|1|5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|OMC|2208
8B5L|1|5|A|2209
8B5L|1|5|A|2210
8B5L|1|5|A|2211
8B5L|1|5|U|2212
8B5L|1|5|A|2213
8B5L|1|5|U|2214
*
8B5L|1|5|A|2232
8B5L|1|5|G|2233
8B5L|1|5|G|2234
*
8B5L|1|5|C|2667
8B5L|1|5|A|2668
8B5L|1|5|U|2669
8B5L|1|5|G|2670
8B5L|1|5|U|2671
8B5L|1|5|U|2672
*
8B5L|1|5|A|3588
8B5L|1|5|G|3589

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

Ribosomal protein L19

Chain d

60S ribosomal protein L31