J4_8B5L_006
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8B5L|1|5|C|2280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B5L_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.078
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|G|2249
8B5L|1|5|G|2250
8B5L|1|5|U|2251
8B5L|1|5|U|2252
8B5L|1|5|C|2253
*
8B5L|1|5|G|2277
8B5L|1|5|G|2278
8B5L|1|5|U|2279
8B5L|1|5|C|2280
8B5L|1|5|A|2281
8B5L|1|5|G|2282
*
8B5L|1|5|U|2381
8B5L|1|5|C|2382
*
8B5L|1|5|G|2620
8B5L|1|5|G|2621
8B5L|1|5|C|2622
8B5L|1|5|C|2623
8B5L|1|5|G|2624
8B5L|1|5|U|2625
8B5L|1|5|A|2626
8B5L|1|5|C|2627
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- Ribosomal protein L19
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39-like
- Chain s
- Protein transport protein Sec61 subunit alpha isoform 1
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