J4_8B5L_012
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUAA*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8B5L|1|5|U|4423
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|G|4333
8B5L|1|5|U|4334
8B5L|1|5|A|4335
8B5L|1|5|A|4336
*
8B5L|1|5|OMU|4366
8B5L|1|5|C|4367
*
8B5L|1|5|G|4422
8B5L|1|5|U|4423
8B5L|1|5|G|4424
*
8B5L|1|5|C|4458
8B5L|1|5|G|4459
8B5L|1|5|C|4460
8B5L|1|5|C|4461
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain O
- 60S ribosomal protein L13a
- Chain V
- 60S ribosomal protein L23
Coloring options: