J4_8BH4_008

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH4_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1058

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8BH4|1|0|A|1772
8BH4|1|0|A|1773
8BH4|1|0|C|1774
8BH4|1|0|U|1775
8BH4|1|0|G|1776
*
8BH4|1|0|C|1788
8BH4|1|0|A|1789
8BH4|1|0|C|1790
8BH4|1|0|A|1791
8BH4|1|0|G|1792
*
8BH4|1|0|U|1827
8BH4|1|0|G|1828
8BH4|1|0|A|1829
8BH4|1|0|C|1830
*
8BH4|1|0|G|1975
8BH4|1|0|U|1976
8BH4|1|0|A|1977
8BH4|1|0|A|1978
8BH4|1|0|U|1979

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2