J4_8BHF_005

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8BHF|1|A2|A|2369, 8BHF|1|A2|U|2372, 8BHF|1|A2|U|2831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|2368
8BHF|1|A2|A|2369
8BHF|1|A2|A|2370
8BHF|1|A2|A|2371
8BHF|1|A2|U|2372
8BHF|1|A2|A|2373
8BHF|1|A2|U|2374
*
8BHF|1|A2|A|2392
8BHF|1|A2|G|2393
8BHF|1|A2|G|2394
*
8BHF|1|A2|C|2827
8BHF|1|A2|A|2828
8BHF|1|A2|U|2829
8BHF|1|A2|G|2830
8BHF|1|A2|U|2831
8BHF|1|A2|U|2832
*
8BHF|1|A2|A|3851
8BHF|1|A2|G|3852

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain E1

Ribosomal protein L19

Chain Q1

60S ribosomal protein L31