J4_8BHF_006
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8BHF|1|A2|C|2440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0694
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|G|2409
8BHF|1|A2|G|2410
8BHF|1|A2|U|2411
8BHF|1|A2|U|2412
8BHF|1|A2|C|2413
*
8BHF|1|A2|G|2437
8BHF|1|A2|G|2438
8BHF|1|A2|U|2439
8BHF|1|A2|C|2440
8BHF|1|A2|A|2441
8BHF|1|A2|G|2442
*
8BHF|1|A2|U|2541
8BHF|1|A2|C|2542
*
8BHF|1|A2|G|2780
8BHF|1|A2|G|2781
8BHF|1|A2|C|2782
8BHF|1|A2|C|2783
8BHF|1|A2|G|2784
8BHF|1|A2|U|2785
8BHF|1|A2|A|2786
8BHF|1|A2|C|2787
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E1
- Ribosomal protein L19
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain T1
- 60S ribosomal protein L34
- Chain U1
- 60S ribosomal protein L35
- Chain W1
- Ribosomal protein L37
- Chain X1
- 60S ribosomal protein L38
- Chain Y1
- 60S ribosomal protein L39-like
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