J4_8BHF_012

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

8BHF|1|A2|U|4663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHF_012 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0628

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|G|4573
8BHF|1|A2|U|4574
8BHF|1|A2|A|4575
8BHF|1|A2|A|4576
*
8BHF|1|A2|U|4606
8BHF|1|A2|C|4607
*
8BHF|1|A2|G|4662
8BHF|1|A2|U|4663
8BHF|1|A2|G|4664
*
8BHF|1|A2|C|4698
8BHF|1|A2|G|4699
8BHF|1|A2|C|4700
8BHF|1|A2|C|4701

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3