J4_8BHF_014
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8BHF|1|A3|A|672, 8BHF|1|A3|A|1083, 8BHF|1|A3|C|1085, 8BHF|1|A3|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHF_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0788
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A3|A|671
8BHF|1|A3|A|672
8BHF|1|A3|G|673
*
8BHF|1|A3|C|1032
8BHF|1|A3|G|1033
8BHF|1|A3|A|1034
8BHF|1|A3|A|1035
8BHF|1|A3|A|1036
8BHF|1|A3|G|1037
*
8BHF|1|A3|C|1078
8BHF|1|A3|C|1079
8BHF|1|A3|A|1080
8BHF|1|A3|U|1081
8BHF|1|A3|A|1082
8BHF|1|A3|A|1083
8BHF|1|A3|A|1084
8BHF|1|A3|C|1085
8BHF|1|A3|G|1086
8BHF|1|A3|A|1087
8BHF|1|A3|U|1088
8BHF|1|A3|G|1089
*
8BHF|1|A3|U|1160
8BHF|1|A3|U|1161
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain M3
- 40S ribosomal protein S11
- Chain O3
- ribosomal protein uS15
- Chain P3
- Ribosomal protein S14
- Chain X3
- Ribosomal protein S15a
- Chain Y3
- Ribosomal protein S23
- Chain a1
- 60S ribosomal protein L41
- Chain b3
- 40S ribosomal protein S26
- Chain c1
- 60S ribosomal protein L37a
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