3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
8BHN|1|0|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BHN_010 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1254
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

8BHN|1|0|C|2285
8BHN|1|0|G|2286
8BHN|1|0|A|2287
8BHN|1|0|A|2288
8BHN|1|0|G|2289
*
8BHN|1|0|U|2343
8BHN|1|0|U|2344
8BHN|1|0|G|2345
8BHN|1|0|A|2346
8BHN|1|0|C|2347
*
8BHN|1|0|G|2370
8BHN|1|0|G|2371
8BHN|1|0|U|2372
*
8BHN|1|0|A|2381
8BHN|1|0|G|2382
8BHN|1|0|G|2383

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain L
50S ribosomal protein L18
Chain T
50S ribosomal protein L27
Chain b
50S ribosomal protein L33
Chain d
50S ribosomal protein L35

Coloring options:


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