J4_8BIL_008

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0993

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8BIL|1|0|A|1772
8BIL|1|0|A|1773
8BIL|1|0|C|1774
8BIL|1|0|U|1775
8BIL|1|0|G|1776
*
8BIL|1|0|C|1788
8BIL|1|0|A|1789
8BIL|1|0|C|1790
8BIL|1|0|A|1791
8BIL|1|0|G|1792
*
8BIL|1|0|U|1827
8BIL|1|0|G|1828
8BIL|1|0|A|1829
8BIL|1|0|C|1830
*
8BIL|1|0|G|1975
8BIL|1|0|U|1976
8BIL|1|0|A|1977
8BIL|1|0|A|1978
8BIL|1|0|U|1979

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2