3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAA*UC*GCU*AUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BN3_011 not in the Motif Atlas
Homologous match to J4_8P9A_020
Geometric discrepancy: 0.0702
The information below is about J4_8P9A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_65356.1
Basepair signature
cWW-tSS-cWW-cWW-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8BN3|1|1|U|3010
8BN3|1|1|A|3011
8BN3|1|1|A|3012
*
8BN3|1|1|U|3042
8BN3|1|1|C|3043
*
8BN3|1|1|G|3098
8BN3|1|1|C|3099
8BN3|1|1|U|3100
*
8BN3|1|1|A|3134
8BN3|1|1|U|3135
8BN3|1|1|G|3136

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain M6
60S ribosomal protein L16-A
Chain N3
60S ribosomal protein L23-A

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