J4_8BN3_012
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8BN3|1|2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BN3_012 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0672
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BN3|1|2|C|99
8BN3|1|2|A|100
8BN3|1|2|U|101
8BN3|1|2|U|102
8BN3|1|2|A|103
8BN3|1|2|A|104
8BN3|1|2|A|105
8BN3|1|2|U|106
8BN3|1|2|C|107
*
8BN3|1|2|G|307
8BN3|1|2|C|308
8BN3|1|2|C|309
*
8BN3|1|2|G|357
8BN3|1|2|U|358
8BN3|1|2|A|359
8BN3|1|2|A|360
8BN3|1|2|C|361
*
8BN3|1|2|G|383
8BN3|1|2|G|384
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- Small ribosomal subunit protein uS17A
- Chain D3
- 40S ribosomal protein S23-A
- Chain S4
- Small ribosomal subunit protein eS4A
- Chain S8
- 40S ribosomal protein S8
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