J4_8BQD_004
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BQD_004 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1185
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|C|185
8BQD|1|BQ|U|186
8BQD|1|BQ|A|187
8BQD|1|BQ|U|188
8BQD|1|BQ|G|189
*
8BQD|1|BQ|C|205
8BQD|1|BQ|G|206
8BQD|1|BQ|U|207
8BQD|1|BQ|C|208
*
8BQD|1|BQ|G|212
8BQD|1|BQ|A|213
8BQD|1|BQ|G|214
*
8BQD|1|BQ|C|226
8BQD|1|BQ|G|227
8BQD|1|BQ|U|228
8BQD|1|BQ|G|229
8BQD|1|BQ|U|230
8BQD|1|BQ|G|231
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain BE
- RPL4A isoform 1
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: