J4_8BQD_005

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

8BQD|1|BQ|A|1452, 8BQD|1|BQ|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BQD_005 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1216

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|BQ|C|1451
8BQD|1|BQ|A|1452
8BQD|1|BQ|A|1453
8BQD|1|BQ|A|1454
8BQD|1|BQ|U|1455
8BQD|1|BQ|A|1456
8BQD|1|BQ|U|1457
*
8BQD|1|BQ|A|1475
8BQD|1|BQ|G|1476
*
8BQD|1|BQ|U|1877
8BQD|1|BQ|G|1878
8BQD|1|BQ|A|1879
8BQD|1|BQ|U|1880
*
8BQD|1|BQ|A|2352
8BQD|1|BQ|G|2353

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A