J4_8BQX_004

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BQX_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1185

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|C|185
8BQX|1|BQ|U|186
8BQX|1|BQ|A|187
8BQX|1|BQ|U|188
8BQX|1|BQ|G|189
*
8BQX|1|BQ|C|205
8BQX|1|BQ|G|206
8BQX|1|BQ|U|207
8BQX|1|BQ|C|208
*
8BQX|1|BQ|G|212
8BQX|1|BQ|A|213
8BQX|1|BQ|G|214
*
8BQX|1|BQ|C|226
8BQX|1|BQ|G|227
8BQX|1|BQ|U|228
8BQX|1|BQ|G|229
8BQX|1|BQ|U|230
8BQX|1|BQ|G|231

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA