J4_8BQX_006
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8BQX|1|BQ|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BQX_006 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0725
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQX|1|BQ|G|1492
8BQX|1|BQ|G|1493
8BQX|1|BQ|U|1494
8BQX|1|BQ|U|1495
8BQX|1|BQ|C|1496
*
8BQX|1|BQ|G|1520
8BQX|1|BQ|G|1521
8BQX|1|BQ|U|1522
8BQX|1|BQ|U|1523
8BQX|1|BQ|A|1524
8BQX|1|BQ|G|1525
*
8BQX|1|BQ|C|1614
8BQX|1|BQ|C|1615
*
8BQX|1|BQ|G|1829
8BQX|1|BQ|G|1830
8BQX|1|BQ|U|1831
8BQX|1|BQ|C|1832
8BQX|1|BQ|G|1833
8BQX|1|BQ|U|1834
8BQX|1|BQ|A|1835
8BQX|1|BQ|C|1836
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AI
- RPL38 isoform 1
- Chain AL
- 60S ribosomal protein L39
- Chain BF
- 60S ribosomal protein L19-A
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: