J4_8BR8_011
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- ACG*CGAAGG*CCGUAAACGGUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 8BR8|1|St|C|503, 8BR8|1|St|A|780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BR8_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1061
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BR8|1|St|A|502
8BR8|1|St|C|503
8BR8|1|St|G|504
*
8BR8|1|St|C|729
8BR8|1|St|G|730
8BR8|1|St|A|731
8BR8|1|St|A|732
8BR8|1|St|G|733
8BR8|1|St|G|734
*
8BR8|1|St|C|775
8BR8|1|St|C|776
8BR8|1|St|G|777
8BR8|1|St|U|778
8BR8|1|St|A|779
8BR8|1|St|A|780
8BR8|1|St|A|781
8BR8|1|St|C|782
8BR8|1|St|G|783
8BR8|1|St|G|784
8BR8|1|St|U|785
8BR8|1|St|G|786
*
8BR8|1|St|C|847
8BR8|1|St|U|848
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain Lo
- 60S ribosomal protein L41
- Chain Lq
- Ribosomal protein L37a
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
- Chain SJ
- Ribosomal protein S15A
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
- Chain SP
- Ribosomal protein S13
- Chain SQ
- Ribosomal protein S14
- Chain Sd
- 40S ribosomal protein S26
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