J4_8BRM_008

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCACG*CCGAC*GCC*GGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BRM_008 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.2378

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

8BRM|1|Lt|C|2078
8BRM|1|Lt|C|2079
8BRM|1|Lt|A|2080
8BRM|1|Lt|C|2081
8BRM|1|Lt|G|2082
*
8BRM|1|Lt|C|2136
8BRM|1|Lt|C|2137
8BRM|1|Lt|G|2138
8BRM|1|Lt|A|2139
8BRM|1|Lt|C|2140
*
8BRM|1|Lt|G|2164
8BRM|1|Lt|C|2165
8BRM|1|Lt|C|2166
*
8BRM|1|Lt|G|2175
8BRM|1|Lt|G|2176
8BRM|1|Lt|G|2177

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LU

Ribosomal protein L21

Chain Lc

Ribosomal protein L29

Chain Lp

Ribosomal protein L44