J4_8BTK_001

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

8BTK|1|A2|G|408

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BTK_001 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.2306

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.2

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

3

Unit IDs

8BTK|1|A2|C|98
8BTK|1|A2|A2M|99
8BTK|1|A2|U|100
8BTK|1|A2|U|101
8BTK|1|A2|A|102
8BTK|1|A2|A|103
8BTK|1|A2|A|104
8BTK|1|A2|PSU|105
8BTK|1|A2|C|106
*
8BTK|1|A2|G|356
8BTK|1|A2|C|357
8BTK|1|A2|C|358
*
8BTK|1|A2|G|406
8BTK|1|A2|PSU|407
8BTK|1|A2|G|408
8BTK|1|A2|A|409
8BTK|1|A2|C|410
*
8BTK|1|A2|G|432
8BTK|1|A2|G|433

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11

Chain Aw

40S ribosomal protein S23