J4_8BUU_001

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8BUU|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BUU_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1679

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8BUU|1|A|C|271
8BUU|1|A|C|272
*
8BUU|1|A|G|417
8BUU|1|A|A|418
8BUU|1|A|G|419
8BUU|1|A|U|420
8BUU|1|A|A|421
8BUU|1|A|C|422
*
8BUU|1|A|G|446
8BUU|1|A|G|447
8BUU|1|A|A|448
8BUU|1|A|A|449
8BUU|1|A|U|450
8BUU|1|A|C|451
8BUU|1|A|C|452
8BUU|1|A|G|453
*
8BUU|1|A|C|468
8BUU|1|A|A|469
8BUU|1|A|A|470
8BUU|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28