J4_8BUU_006

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8BUU|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BUU_006 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0869

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8BUU|1|A|U|1352
8BUU|1|A|C|1353
*
8BUU|1|A|G|1377
8BUU|1|A|G|1378
8BUU|1|A|U|1379
8BUU|1|A|U|1380
8BUU|1|A|A|1381
8BUU|1|A|G|1382
*
8BUU|1|A|C|1443
8BUU|1|A|C|1444
*
8BUU|1|A|G|1642
8BUU|1|A|C|1643
8BUU|1|A|C|1644
8BUU|1|A|C|1645
8BUU|1|A|G|1646
8BUU|1|A|U|1647
8BUU|1|A|A|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23