J4_8BUU_008

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BUU_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0564

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8BUU|1|A|G|1801
8BUU|1|A|A|1802
8BUU|1|A|C|1803
8BUU|1|A|U|1804
8BUU|1|A|G|1805
*
8BUU|1|A|C|1817
8BUU|1|A|A|1818
8BUU|1|A|C|1819
8BUU|1|A|A|1820
8BUU|1|A|G|1821
*
8BUU|1|A|U|1856
8BUU|1|A|G|1857
8BUU|1|A|A|1858
8BUU|1|A|C|1859
*
8BUU|1|A|G|2004
8BUU|1|A|C|2005
8BUU|1|A|A|2006
8BUU|1|A|A|2007
8BUU|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2