J4_8BUU_015
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8BUU|1|a|G|585, 8BUU|1|a|A|824, 8BUU|1|a|C|826, 8BUU|1|a|A|828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BUU_015 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0648
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|a|G|584
8BUU|1|a|G|585
8BUU|1|a|G|586
*
8BUU|1|a|C|773
8BUU|1|a|G|774
8BUU|1|a|A|775
8BUU|1|a|A|776
8BUU|1|a|A|777
8BUU|1|a|G|778
*
8BUU|1|a|C|819
8BUU|1|a|C|820
8BUU|1|a|G|821
8BUU|1|a|U|822
8BUU|1|a|A|823
8BUU|1|a|A|824
8BUU|1|a|A|825
8BUU|1|a|C|826
8BUU|1|a|G|827
8BUU|1|a|A|828
8BUU|1|a|U|829
8BUU|1|a|G|830
*
8BUU|1|a|C|889
8BUU|1|a|C|890
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
Coloring options: