J4_8C3A_012
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8C3A|1|AS|A|1448, 8C3A|1|AS|U|1451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8C3A_012 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.0561
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C3A|1|AS|C|1447
8C3A|1|AS|A|1448
8C3A|1|AS|A|1449
8C3A|1|AS|A|1450
8C3A|1|AS|U|1451
8C3A|1|AS|A|1452
8C3A|1|AS|U|1453
*
8C3A|1|AS|A|1471
8C3A|1|AS|G|1472
*
8C3A|1|AS|U|1873
8C3A|1|AS|G|1874
8C3A|1|AS|A|1875
8C3A|1|AS|U|1876
*
8C3A|1|AS|A|2330
8C3A|1|AS|G|2331
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BK
- Ribosomal protein L22
- Chain BM
- 60S ribosomal protein L19-A
- Chain BY
- 60S ribosomal protein L31-B
Coloring options: